[darkestnight]

Originally Posted by bphelps I now have a second domain I am trying to set up however, the cpanel interface only lets me choose "addon domain" which basically sets up the domains as follows: http://www.domain1.com/domain2.com. Even when typing in Welcome to DOMAIN2.COM it redirects to the above format. I'm still trying to fix this problem. Obviously, what I'm looking for is for both websites to be under their own respective domain names.

Sounds like you correctly set up an addon domain, however for some reason enabled redirection on the domain. Go to the addon domains page, manage redirection, then disable it!