Hi Colin,
I suspect that the webgains tracking code is triggered on the merchants checkout complete page - payments via google checkout would never hit this page.
It is possible (although not a trivial task) to have google trigger whatever tacking code you like at the end of the payment process, but I guess the merchant hasn't done so.
I guess it's also possible that they're manually reconciling google checkout orders & batch uploading them to webgains.
TTFN
BFG
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